bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0207705
HIT000040244_03
(
BC027175
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,626 - 4,365,939 (6,314)
query : 1 - 1,269 (1,269/1,291)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000568324_05 (
ENST00000463532
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,617 - 4,365,972 (6,356)
query : 1 - 4,569 (4,569/4,569)
2 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 11.5, extr 9, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000580330_04 (
ENST00000476119
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,617 - 4,365,972 (6,356)
query : 1 - 4,569 (4,569/4,569)
2 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000584565_05 (
ENST00000480557
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,617 - 4,365,972 (6,356)
query : 1 - 4,569 (4,569/4,569)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000591244_05 (
ENST00000487546
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,617 - 4,365,972 (6,356)
query : 1 - 4,569 (4,569/4,569)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 11.5, extr 9, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000329512_06
(
AB209577
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,621 - 4,365,972 (6,352)
query : 1 - 4,565 (4,565/4,565)
2 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000218295_03
(
U15085
)
Representative transcript
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,624 - 4,366,028 (6,405)
query : 1 - 1,360 (1,360/1,362)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 0.999
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000271023_03
(
CR591828
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,622 - 4,365,974 (6,353)
query : 1 - 1,308 (1,308/1,308)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000332058_03
(
AY645722
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,626 - 4,366,028 (6,403)
query : 1 - 1,358 (1,358/1,358)
6 exons
identity = 0.998
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000364509_03 (
ENST00000383231
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,626 - 4,366,028 (6,403)
query : 1 - 1,358 (1,358/1,358)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000526354_02 (
ENST00000428420
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,626 - 4,366,028 (6,403)
query : 1 - 1,358 (1,358/1,358)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000538012_02 (
ENST00000440078
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,626 - 4,366,028 (6,403)
query : 1 - 1,358 (1,358/1,358)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000326693_03
(
Z23139
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,626 - 4,365,964 (6,339)
query : 1 - 1,293 (1,293/1,293)
6 exons
identity = 0.999
3'(0.996)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000273820_03
(
CR594625
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,359,636 - 4,365,943 (6,308)
query : 1 - 1,263 (1,263/1,263)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000290960_03
(
CR611765
)
(Similar to MHC class II antigen HLA-DM beta chain; Fragment;)
genome : 4,359,653 - 4,366,009 (6,357)
query : 1 - 1,311 (1,311/1,311)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, pero 4.5, mito_pero 3.5, plas 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000511551_03 (
ENST00000413617
)
(Similar to MHC class II antigen HLA-DM beta chain; Fragment;)
genome : 4,359,976 - 4,366,028 (6,053)
query : 1 - 1,007 (1,007/1,007)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, pero 4.5, mito_pero 3.5, plas 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000526798_03 (
ENST00000428864
)
(Similar to MHC class II antigen HLA-DM beta chain; Fragment;)
genome : 4,359,976 - 4,366,028 (6,053)
query : 1 - 1,007 (1,007/1,007)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, pero 4.5, mito_pero 3.5, plas 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000545388_03 (
ENST00000447454
)
(Similar to MHC class II antigen HLA-DM beta chain; Fragment;)
genome : 4,359,976 - 4,366,028 (6,053)
query : 1 - 1,007 (1,007/1,007)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, pero 4.5, mito_pero 3.5, plas 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000550341_03 (
ENST00000452407
)
(Similar to MHC class II antigen HLA-DM beta chain; Fragment;)
genome : 4,359,976 - 4,366,028 (6,053)
query : 1 - 1,007 (1,007/1,007)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, pero 4.5, mito_pero 3.5, plas 2, mito 1.5,
cyto_plas 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000267103_04
(
CR407606
)
(HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,360,329 - 4,365,795 (5,467)
query : 1 - 776 (776/789)
5 exons
identity = 0.999
3'(1.000)5'
coverage = 0.984
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, pero 3.5, mito_pero 3, cyto 2, mito 1.5,
cyto_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000495641_02
(
AK301017
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,361,786 - 4,365,989 (4,204)
query : 1 - 986 (986/986)
3 exons
identity = 0.990
3'(0.962)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 7.5, cyto_nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0207705
HIT000490496_03
(
AK295872
)
(Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;)
genome : 4,361,997 - 4,366,014 (4,018)
query : 1 - 1,004 (1,004/1,004)
3 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207705)
HIX0057992
HIT000035253_05
(
BC011447
)
Representative transcript
(HLA class II histocompatibility antigen, DM alpha chain precursor.)
genome : 4,373,608 - 4,378,080 (4,473)
query : 5 - 1,092 (1,088/1,123)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000040177_05
(
BC026279
)
(HLA class II histocompatibility antigen, DM alpha chain precursor.)
genome : 4,373,608 - 4,378,040 (4,433)
query : 1 - 1,048 (1,048/1,079)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000322542_05
(
X62744
)
(HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;)
genome : 4,373,606 - 4,378,065 (4,460)
query : 6 - 1,080 (1,075/1,100)
5 exons
identity = 0.998
3'(1.000;1.000;0.993;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000574215_04 (
ENST00000469705
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000577288_04 (
ENST00000472934
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000581684_04 (
ENST00000477541
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,735 (1,735/1,735)
4 exons
identity = 0.998
3'(0.988;1.000;0.999;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000583453_04 (
ENST00000479386
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000585329_04 (
ENST00000481354
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000591442_05 (
ENST00000487750
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 0.999
3'(1.000;1.000;0.999;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 2, E.R. 2, extr_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000592618_04 (
ENST00000489001
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000601319_04 (
ENST00000498081
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,601 - 4,378,097 (4,497)
query : 1 - 1,738 (1,738/1,738)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000565068_05 (
ENST00000460128
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000573585_05 (
ENST00000469049
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000576617_05 (
ENST00000472231
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000581292_05 (
ENST00000477135
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000581364_05 (
ENST00000477208
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000584781_05 (
ENST00000480785
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 657 (657/657)
2 exons
identity = 0.995
3'(0.988;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000593467_05 (
ENST00000489879
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000598872_05 (
ENST00000495512
)
(Hypothetical short protein.)
genome : 4,373,601 - 4,374,662 (1,062)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000364505_05 (
ENST00000383227
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,023 (1,023/1,023)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, pero 4.5, mito_pero 4, E.R. 3, mito 2.5,
plas 2, cyto 2, lyso 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000364506_05 (
ENST00000383228
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 4, mito_pero 3, mito 2.5, pero 2.5,
plas 2, cyto 2, lyso 2, E.R._golg 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000364508_05 (
ENST00000383230
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,125 (1,125/1,125)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000516975_03 (
ENST00000419041
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,023 (1,023/1,023)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, pero 4.5, mito_pero 4, E.R. 3, mito 2.5,
plas 2, cyto 2, lyso 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000518233_03 (
ENST00000420299
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 4, mito_pero 3, mito 2.5, pero 2.5,
plas 2, cyto 2, lyso 2, E.R._golg 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000530925_03 (
ENST00000432991
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,023 (1,023/1,023)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, pero 4.5, mito_pero 4, E.R. 3, mito 2.5,
plas 2, cyto 2, lyso 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000532271_03 (
ENST00000434337
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,125 (1,125/1,125)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000533437_03 (
ENST00000435503
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 4, mito_pero 3, mito 2.5, pero 2.5,
plas 2, cyto 2, lyso 2, E.R._golg 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000539309_03 (
ENST00000441375
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,125 (1,125/1,125)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000548535_03 (
ENST00000450601
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,125 (1,125/1,125)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000549082_03 (
ENST00000451148
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,023 (1,023/1,023)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, pero 4.5, mito_pero 4, E.R. 3, mito 2.5,
plas 2, cyto 2, lyso 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000549687_03 (
ENST00000451753
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 4, mito_pero 3, mito 2.5, pero 2.5,
plas 2, cyto 2, lyso 2, E.R._golg 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000550264_03 (
ENST00000452330
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,023 (1,023/1,023)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, pero 4.5, mito_pero 4, E.R. 3, mito 2.5,
plas 2, cyto 2, lyso 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000550368_03 (
ENST00000452434
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,023 (1,023/1,023)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, pero 4.5, mito_pero 4, E.R. 3, mito 2.5,
plas 2, cyto 2, lyso 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000550549_03 (
ENST00000452615
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,125 (1,125/1,125)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000550637_03 (
ENST00000452703
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 4, mito_pero 3, mito 2.5, pero 2.5,
plas 2, cyto 2, lyso 2, E.R._golg 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000551424_03 (
ENST00000453490
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 1,125 (1,125/1,125)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000555219_03 (
ENST00000457285
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,602 - 4,378,111 (4,510)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 4, mito_pero 3, mito 2.5, pero 2.5,
plas 2, cyto 2, lyso 2, E.R._golg 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000424655_05
(
AK291858
)
(HLA class II histocompatibility antigen, DM alpha chain precursor.)
genome : 4,373,607 - 4,378,047 (4,441)
query : 1 - 1,056 (1,056/1,056)
5 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000571027_03 (
ENST00000466370
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,395,720 (21,992)
query : 1 - 698 (698/698)
4 exons
identity = 0.984
3'(1.000;1.000;0.964;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, mito 7, plas 4, pero 4,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000577192_03 (
ENST00000472833
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,395,720 (21,992)
query : 1 - 698 (698/698)
4 exons
identity = 0.984
3'(1.000;1.000;0.964;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, mito 7, plas 4, pero 4,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000578043_03 (
ENST00000473725
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,395,720 (21,992)
query : 1 - 695 (695/695)
4 exons
identity = 0.980
3'(0.977;1.000;0.964;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, mito 7, plas 4, pero 4,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000589776_03 (
ENST00000485999
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,395,720 (21,992)
query : 1 - 698 (698/698)
4 exons
identity = 0.984
3'(1.000;1.000;0.964;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, mito 7, plas 4, pero 4,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000595483_03 (
ENST00000491978
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,395,720 (21,992)
query : 1 - 698 (698/698)
4 exons
identity = 0.984
3'(1.000;1.000;0.964;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, mito 7, plas 4, pero 4,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000597088_03 (
ENST00000493659
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,395,720 (21,992)
query : 1 - 698 (698/698)
4 exons
identity = 0.984
3'(1.000;1.000;0.964;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, mito 7, plas 4, pero 4,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000572333_05 (
ENST00000467732
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,375,794 (2,066)
query : 1 - 560 (560/560)
3 exons
identity = 0.980
3'(1.000;1.000;0.964)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 7.5, mito 6.5, mito_pero 5.5,
plas 5, pero 3.5, nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000594400_05 (
ENST00000490859
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,373,729 - 4,375,794 (2,066)
query : 1 - 560 (560/560)
3 exons
identity = 0.980
3'(1.000;1.000;0.964)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 7.5, mito 6.5, mito_pero 5.5,
plas 5, pero 3.5, nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000567071_03 (
ENST00000462225
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,393,448 (19,687)
query : 1 - 806 (806/806)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito 8, E.R._mito 8, extr 4, E.R. 4, plas 3,
nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000569142_03 (
ENST00000464392
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,393,448 (19,687)
query : 1 - 806 (806/806)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito 8, E.R._mito 8, extr 4, E.R. 4, plas 3,
nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000571099_03 (
ENST00000466446
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,393,448 (19,687)
query : 1 - 806 (806/806)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito 8, E.R._mito 8, extr 4, E.R. 4, plas 3,
nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000583362_03 (
ENST00000479292
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,393,448 (19,687)
query : 1 - 806 (806/806)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito 8, E.R._mito 8, extr 4, E.R. 4, plas 3,
nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000590521_03 (
ENST00000486785
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,393,448 (19,687)
query : 1 - 806 (806/806)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito 8, E.R._mito 8, extr 4, E.R. 4, plas 3,
nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000597635_03 (
ENST00000494230
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,393,448 (19,687)
query : 1 - 806 (806/806)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito 8, E.R._mito 8, extr 4, E.R. 4, plas 3,
nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000575121_05 (
ENST00000470656
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,374,880 (1,119)
query : 1 - 506 (506/506)
3 exons
identity = 0.998
3'(1.000;1.000;0.996)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_mito 10.1667, cyto 10, mito 9.5,
E.R._mito 7.66667, mito_pero 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000583118_04 (
ENST00000479036
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,373,762 - 4,374,880 (1,119)
query : 1 - 506 (506/506)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 10.5, cyto 9, E.R._mito 8.16667, mito_pero 8,
plas 5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000267233_07
(
CR450324
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,378,025 (3,764)
query : 1 - 781 (781/783)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, mito 5.5, mito_pero 5.5, pero 4.5, E.R. 3,
cyto 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000510328_04 (
ENST00000412394
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000514740_04 (
ENST00000416806
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000520130_04 (
ENST00000422196
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000531564_04 (
ENST00000433630
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000538651_04 (
ENST00000440717
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000552232_04 (
ENST00000454298
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000554734_04 (
ENST00000456800
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,262 - 4,377,450 (3,189)
query : 1 - 871 (871/871)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito_pero 6, mito 5.5, pero 5.5, plas 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000492705_03
(
AK298081
)
(Immunoglobulin C1-set domain containing protein.)
genome : 4,374,626 - 4,378,084 (3,459)
query : 1 - 1,292 (1,292/1,292)
2 exons
identity = 0.981
3'(0.999;0.837)5'
coverage = 1.000
InterPro :
IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR013783 : Immunoglobulin-like fold
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, extr 7, cyto_nucl 2, nucl 1.5, cyto 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000514231_03 (
ENST00000416297
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,394,098 (19,451)
query : 1 - 611 (611/611)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9.83333, cyto_pero 7,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000515976_03 (
ENST00000418042
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,394,098 (19,451)
query : 1 - 611 (611/611)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9.83333, cyto_pero 7,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000517165_03 (
ENST00000419231
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,394,098 (19,451)
query : 1 - 611 (611/611)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9.83333, cyto_pero 7,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000520766_03 (
ENST00000422832
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,394,098 (19,451)
query : 1 - 611 (611/611)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9.83333, cyto_pero 7,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000524110_03 (
ENST00000426176
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,394,098 (19,451)
query : 1 - 611 (611/611)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9.83333, cyto_pero 7,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000556000_03 (
ENST00000458066
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,394,098 (19,451)
query : 1 - 611 (611/611)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9.83333, cyto_pero 7,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000535219_04 (
ENST00000437285
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,374,648 - 4,375,794 (1,147)
query : 1 - 518 (518/518)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR003597 : Immunoglobulin C1-set
IPR007110 : Immunoglobulin-like
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000565964_05 (
ENST00000461059
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000569846_05 (
ENST00000465136
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000570712_05 (
ENST00000466040
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000570714_05 (
ENST00000466043
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000579534_05 (
ENST00000475284
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000579860_05 (
ENST00000475627
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000580066_05 (
ENST00000475844
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000591474_05 (
ENST00000487786
)
(MHC class II, alpha chain, N-terminal domain containing protein.)
genome : 4,375,075 - 4,378,023 (2,949)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001003 : MHC class II, alpha chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.33333, cyto 5, nucl 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000429028_07
(
AK310162
)
(Similar to HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;)
genome : 4,375,379 - 4,378,040 (2,662)
query : 1 - 979 (979/979)
3 exons
identity = 0.994
3'(1.000;0.993;0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 5, cyto 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0057992
HIT000011800
(
AK055186
)
(Hypothetical protein.)
genome : 4,388,292 - 4,393,495 (5,204)
query : 1 - 2,748 (2,748/2,748)
2 exons
identity = 0.998
3'(1.000;0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057992)
HIX0166665
HIT000084789_05
(
AY152720
)
(Non-protein coding transcript.)
genome : 4,393,617 - 4,393,698 (82)
query : 1 - 82 (82/82)
1 exon
identity = 0.988
5'(0.988)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000482593_02 (
ENST00000399529
)
(Bromodomain-containing protein 2 isoform 1.)
genome : 4,393,664 - 4,406,502 (12,839)
query : 1 - 4,893 (4,893/4,893)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000512665_01 (
ENST00000414731
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,393,664 - 4,406,502 (12,839)
query : 1 - 4,893 (4,893/4,893)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000101461_04
(
D42040
)
Representative transcript
(Bromodomain-containing protein 2 isoform 1.)
genome : 4,393,664 - 4,406,258 (12,595)
query : 1 - 4,649 (4,649/4,664)
13 exons
identity = 0.999
5'(0.997;0.998;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;0.996)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK168525
Tetraodon
sp. (Tetraodon) : GSTENT00033719001
Takifugu
sp. (Fugu) : SINFRUT00000169442
Equus
sp. (Horse) : XM_001496232
HIX0166665
HIT000571377_03 (
ENST00000466744
)
(Hypothetical protein.)
genome : 4,394,262 - 4,397,145 (2,884)
query : 1 - 642 (642/642)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.66667, extr 9, cyto_nucl 7,
cyto 6, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000574569_03 (
ENST00000470079
)
(Hypothetical protein.)
genome : 4,394,262 - 4,397,145 (2,884)
query : 1 - 642 (642/642)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.66667, extr 9, cyto_nucl 7,
cyto 6, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000591083_03 (
ENST00000487377
)
(Hypothetical protein.)
genome : 4,394,262 - 4,397,145 (2,884)
query : 1 - 642 (642/642)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.66667, extr 9, cyto_nucl 7,
cyto 6, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000591502_03 (
ENST00000487815
)
(Hypothetical protein.)
genome : 4,394,262 - 4,397,145 (2,884)
query : 1 - 642 (642/642)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.66667, extr 9, cyto_nucl 7,
cyto 6, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000599455_03 (
ENST00000496118
)
(Hypothetical protein.)
genome : 4,394,262 - 4,397,145 (2,884)
query : 1 - 642 (642/642)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.66667, extr 9, cyto_nucl 7,
cyto 6, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000575592_03 (
ENST00000471151
)
(Hypothetical protein.)
genome : 4,394,262 - 4,397,023 (2,762)
query : 1 - 520 (520/520)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.66667, extr 9, cyto_nucl 7,
cyto 6, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000428663_04
(
AK309797
)
(Hypothetical protein.)
genome : 4,394,322 - 4,397,482 (3,161)
query : 1 - 919 (919/919)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, nucl 8.5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000531717 (
ENST00000433783
)
(Similar to Bromodomain-containing protein 2; Fragment;)
genome : 4,394,323 - 4,401,618 (7,296)
query : 1 - 887 (887/887)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166773
HIT000513809_03 (
ENST00000415875
)
Representative transcript
(Non-protein coding transcript.)
genome : 4,395,307 - 4,395,821 (515)
query : 1 - 198 (198/198)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166773)
HIX0166773
HIT000524363_03 (
ENST00000426429
)
(Non-protein coding transcript.)
genome : 4,395,307 - 4,395,821 (515)
query : 1 - 198 (198/198)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166773)
HIX0166773
HIT000527287_03 (
ENST00000429353
)
(Non-protein coding transcript.)
genome : 4,395,307 - 4,395,821 (515)
query : 1 - 198 (198/198)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166773)
HIX0166773
HIT000536491_03 (
ENST00000438557
)
(Non-protein coding transcript.)
genome : 4,395,307 - 4,395,821 (515)
query : 1 - 198 (198/198)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166773)
HIX0166773
HIT000537979_03 (
ENST00000440045
)
(Non-protein coding transcript.)
genome : 4,395,307 - 4,395,821 (515)
query : 1 - 198 (198/198)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166773)
HIX0166773
HIT000549835_03 (
ENST00000451901
)
(Non-protein coding transcript.)
genome : 4,395,307 - 4,395,821 (515)
query : 1 - 198 (198/198)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166773)
HIX0166665
HIT000056756_03
(
BX648109
)
(Bromodomain-containing protein 2 isoform 1.)
genome : 4,395,892 - 4,406,302 (10,411)
query : 3 - 4,605 (4,603/4,625)
13 exons
identity = 0.998
5'(1.000;0.998;1.000;1.000;1.000;0.995;0.997;
1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000482592_02 (
ENST00000399528
)
(Bromodomain-containing protein 2 isoform 1.)
genome : 4,395,892 - 4,406,503 (10,612)
query : 1 - 4,807 (4,807/4,807)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000485880_03 (
NM_001113182
)
(Bromodomain-containing protein 2 isoform 1.)
genome : 4,395,892 - 4,406,503 (10,612)
query : 1 - 4,807 (4,807/4,807)
13 exons
identity = 0.999
5'(1.000;0.999;0.997;1.000;1.000;0.995;1.000;
1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000547052_01 (
ENST00000449118
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,395,892 - 4,406,503 (10,612)
query : 1 - 4,807 (4,807/4,807)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000659915_03 (
NR_037625
)
(Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,395,892 - 4,406,503 (10,612)
query : 1 - 4,899 (4,899/4,899)
14 exons
identity = 0.999
5'(1.000;0.999;0.997;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000584015_03 (
ENST00000479973
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,395,934 - 4,403,197 (7,264)
query : 1 - 3,404 (3,404/3,404)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000590595_03 (
ENST00000486864
)
(Similar to Bromodomain-containing protein 2 isoform 3.)
genome : 4,395,934 - 4,403,197 (7,264)
query : 1 - 3,404 (3,404/3,404)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000599091_03 (
ENST00000495733
)
(Similar to Bromodomain-containing protein 2 isoform 3.)
genome : 4,395,934 - 4,403,197 (7,264)
query : 1 - 3,404 (3,404/3,404)
10 exons
identity = 0.999
5'(1.000;0.999;0.997;1.000;1.000;0.995;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000581414_03 (
ENST00000477259
)
(Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,395,957 - 4,406,503 (10,547)
query : 1 - 4,834 (4,834/4,834)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000583747_03 (
ENST00000479699
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,395,957 - 4,406,503 (10,547)
query : 1 - 4,834 (4,834/4,834)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000586822_03 (
ENST00000482914
)
(Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,395,957 - 4,406,503 (10,547)
query : 1 - 4,834 (4,834/4,834)
14 exons
identity = 0.999
5'(1.000;0.999;0.997;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000596519_03 (
ENST00000493063
)
(Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,395,957 - 4,406,503 (10,547)
query : 1 - 4,834 (4,834/4,834)
14 exons
identity = 0.999
5'(1.000;1.000;0.997;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000086895_04
(
BC007715
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,397,221 - 4,403,198 (5,978)
query : 1 - 2,333 (2,333/2,350)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000085836_04
(
BC000477
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,397,230 - 4,403,198 (5,969)
query : 1 - 2,324 (2,324/2,341)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000548254 (
ENST00000450320
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,397,734 - 4,406,503 (8,770)
query : 1 - 3,467 (3,467/3,467)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000524955 (
ENST00000427021
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,398,088 - 4,406,503 (8,416)
query : 1 - 3,210 (3,210/3,210)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
IPR018359 : Bromodomain, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000565178_03 (
ENST00000460240
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,401,141 - 4,403,214 (2,074)
query : 1 - 1,590 (1,590/1,590)
5 exons
identity = 0.999
5'(1.000;0.995;0.999;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, cyto 5, nucl 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000589056_03 (
ENST00000485239
)
(Similar to Bromodomain containing 2; Fragment;)
genome : 4,401,141 - 4,403,214 (2,074)
query : 1 - 1,590 (1,590/1,590)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, cyto 5, nucl 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000566785_03 (
ENST00000461924
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,401,569 - 4,402,901 (1,333)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 6, nucl 3.5, extr 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000570872_03 (
ENST00000466208
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,401,569 - 4,402,901 (1,333)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 6, nucl 3.5, extr 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000585237_03 (
ENST00000481259
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,401,569 - 4,402,901 (1,333)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 6, nucl 3.5, extr 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000586056_03 (
ENST00000482105
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,401,569 - 4,402,901 (1,333)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 6, nucl 3.5, extr 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000598231_03 (
ENST00000494846
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,401,569 - 4,402,901 (1,333)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 6, nucl 3.5, extr 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000599509_03 (
ENST00000496177
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,401,569 - 4,402,901 (1,333)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001487 : Bromodomain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 6, nucl 3.5, extr 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000596289_03 (
ENST00000492825
)
(Similar to Bromodomain-containing protein 2 isoform 2.)
genome : 4,402,755 - 4,403,801 (1,047)
query : 20 - 946 (927/946)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.980
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000618126_04 (
ENST00000518754
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,402,846 - 4,406,503 (3,658)
query : 1 - 1,773 (1,773/1,773)
5 exons
identity = 0.997
5'(0.981;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 15.5, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000570566_04 (
ENST00000465885
)
(Similar to Bromodomain-containing protein 2;)
genome : 4,402,846 - 4,403,214 (369)
query : 1 - 246 (246/246)
2 exons
identity = 0.988
5'(0.981;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, plas 1, extr 1, mito 1, cysk 1,
extr_plas 1, cysk_plas 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000597419_04 (
ENST00000494008
)
(Similar to Bromodomain-containing protein 2;)
genome : 4,402,846 - 4,403,197 (352)
query : 1 - 229 (229/229)
2 exons
identity = 0.987
5'(0.981;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000573553_04 (
ENST00000469015
)
(Non-protein coding transcript.)
genome : 4,402,846 - 4,402,901 (56)
query : 1 - 56 (56/56)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000299637_02
(
CR620442
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,630 (1,630/1,630)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000565290_03 (
ENST00000460359
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,630 (1,630/1,630)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000573668_04 (
ENST00000469132
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,628 (1,628/1,628)
2 exons
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000578787_03 (
ENST00000474498
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,630 (1,630/1,630)
2 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000583625_03 (
ENST00000479568
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,630 (1,630/1,630)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000597868_04 (
ENST00000494471
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,631 (1,631/1,631)
2 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000600617_03 (
ENST00000497338
)
(Similar to Bromodomain-containing protein 2; O27.1.1; Really interesting new gene 3 protein;)
genome : 4,404,538 - 4,406,284 (1,747)
query : 1 - 1,630 (1,630/1,630)
2 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0166665
HIT000601054_04 (
ENST00000497799
)
(Hypothetical short protein.)
genome : 4,404,538 - 4,404,703 (166)
query : 1 - 166 (166/166)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0166665)
HIX0207725
HIT000513024_05 (
ENST00000415090
)
Representative transcript
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000513861_05 (
ENST00000415927
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000527168_05 (
ENST00000429234
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000528033_05 (
ENST00000430099
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000532990_05 (
ENST00000435056
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000546524_05 (
ENST00000448590
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000547351_05 (
ENST00000449417
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
HIX0207725
HIT000547613_05 (
ENST00000449679
)
(MHC class II, beta chain, N-terminal domain containing protein.)
genome : 4,362,352 - 4,378,111 (15,760)
query : 1 - 612 (612/612)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000353 : MHC class II, beta chain, N-terminal
IPR011162 : MHC classes I/II-like antigen recognition protein
IPR013783 : Immunoglobulin-like fold
IPR014745 : MHC class II, alpha/beta chain, N-terminal
GO :
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
0019882 : Biological Process : antigen processing and presentation
0042613 : Cellular Component : MHC class II protein complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207725)
BX927138.5
4364660-4368619 F +
NCBI
BX908719.9
4368620-4402849 F +
NCBI
CR936909.2
4402850-4404659 F +
NCBI