bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0006170
HIT000083957
(
AY056583
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,721 - 117,594,728 (8,008)
query : 1 - 1,709 (1,709/1,709)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000124524 (
ENST00000326274
)
(Transcription cofactor vestigial-like protein 2 isoform 1.)
genome : 117,586,721 - 117,594,728 (8,008)
query : 1 - 2,231 (2,231/2,231)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 12, cyto_nucl 10.5, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000214351 (
NM_153453
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,721 - 117,594,728 (8,008)
query : 1 - 1,709 (1,709/1,709)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000308263 (
ENST00000352536
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,721 - 117,594,728 (8,008)
query : 1 - 1,709 (1,709/1,709)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000248910
(
AJ578053
)
Representative transcript
(Transcription cofactor vestigial-like protein 2 isoform 1.)
genome : 117,586,737 - 117,594,725 (7,989)
query : 1 - 2,212 (2,212/2,212)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC097200
Mus
sp. (Mouse) : BC133696
Equus
sp. (Horse) : ENSECAT00000023526
Gallus
sp. (Chicken) : ENSGALT00000024059
Macaca
sp. (Macaque) : ENSMMUT00000033412
Monodelphis
sp. (Opossum) : ENSMODT00000022590
Oryzias
sp. (Medaka) : ENSORLT00000015666
Tetraodon
sp. (Tetraodon) : GSTENT00018486001
Takifugu
sp. (Fugu) : SINFRUT00000146929
Rattus
sp. (Rat) : XM_001058013
Pan
sp. (Chimpanzee) : XM_001162679
Canis
sp. (Dog) : XM_541214
HIX0006170
HIT000318714 (
NM_182645
)
(Transcription cofactor vestigial-like protein 2 isoform 1.)
genome : 117,586,737 - 117,594,725 (7,989)
query : 1 - 2,212 (2,212/2,212)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000336225
(
BC100798
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,754 - 117,594,160 (7,407)
query : 1 - 1,108 (1,108/1,108)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000336226
(
BC100799
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,754 - 117,594,160 (7,407)
query : 1 - 1,108 (1,108/1,108)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000387838
(
BC118545
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,754 - 117,594,160 (7,407)
query : 1 - 1,108 (1,108/1,108)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000387883
(
BC118622
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,754 - 117,594,160 (7,407)
query : 1 - 1,108 (1,108/1,108)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000263468
(
BC069316
)
(Transcription cofactor vestigial-like protein 2 isoform 2.)
genome : 117,586,844 - 117,593,735 (6,892)
query : 1 - 593 (593/593)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006627 : TDU repeat
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
HIX0006170
HIT000021733
(
AK096878
)
(Transcription cofactor vestigial-like protein 2 isoform 1.)
genome : 117,586,904 - 117,593,832 (6,929)
query : 1 - 1,152 (1,152/1,161)
4 exons
identity = 0.997
5'(1.000;1.000;1.000;0.986)3'
coverage = 0.992
InterPro :
IPR011520 : Vestigial/tondu
GO :
0005634 : Cellular Component : nucleus
0030528 : Molecular Function : transcription regulator activity
0045449 : Biological Process : regulation of transcription
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006170)
Z98880.1
117582724-117598723 F -
NCBI
AT_rich
(TC)n
MIRc
GC_rich
GC_rich
GC_rich
(TAA)n
MER33
CT-rich
(TA)n
(TAGA)n
MIR3
MIR
L3b
(CA)n
(TA)n