H-DBAS RELEASE 4.0 (Jan. 30, 2009)
Transcripts from H-InvDB 6.0 (DDBJ 73 in origin)
Genomes from UCSC hg18 (human) and mm9 (mouse)
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Representative AS Variants (RASVs) set:
   CHGC KDRI FLJ/NEDO MIPS/DKFZ MGC/NIH FANTOM3/RIKEN
FLJ: Full-length cDNA Japan, MIPS: Munich Information Center for Protein Sequences, MGC: Mammalian Gene Collection, FANTOM: Functional Annotation of Mouse
CHGC: Chinese National Human Genome Centre, KDRI: Kazusa DNA Research Institute, DKFZ: German Cancer Research Centre

Locus/cDNA information:
  
 
 
Genomic structure:
Chromosome NO:
Strand: + - both
Genomic position: from to bp
Splice-site sequences: 5' 3'
Splicing motif: ESE (Exonic splicing enhancer)
Retrotransposon: LTR LINE SINE SINE (Alu only)

AS Genomic structure:
Number of RASVs: from to
AS location:
5'-end (5') Internal (In) 3'-end (3')
AS pattern:
Cassette (CS)  (Skipped exon) [including multiple cassette]
Internal acceptor (IA)  (Alternative 3' splice)
Internal donor (ID)  (Alternative 5' splice)
Mutually exclusive (ME) 
Retained Intron (RI) 
AS initiation/termination:
Alternative first (AF)  5'-end
Alternative first acceptor (FA)  5'-end
Alternative last (AL)  3'-end
Alternative last donor (LD)  3'-end

Functional annotation:
ORF length: from to aa
Protein motif:
GO: Molecular function Biological process Cellular component
Subcellular localization signal: WoLF PSORT TargetP
Transmembrane domain: TMHMM SOSUI

AS Functional annotation:
Difference in length of encoded protein: from to aa
AS region: 5'UTR CDS 3'UTR
AS affecting function: Motif GO Subcellular localization signal (Subcell) Transmembrane domain (TMD)
Complex AS pattern: Bridged Nested Multiple CDS

Conservation with mouse (conserved exon means coverange≥70% and identity≥60%): [English] [Japanese]
Exon level: Non-conserved Genome-conserved Transcript-conserved
Transcript level: Non-conserved Conserved AS !

Any combinations are available.